Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: kmer
Upstream-Contact: Brian Walenz <brianwalenz@users.sourceforge.net>
Source: http://sourceforge.net/p/kmer/code/HEAD/tree/

Files: *
Copyright: © 2002 PE Corporation (NY) through the Celera Genomics Group
           © 2003-2004 Applied Biosystems
           © 2004-2015 Brian Walenz
           © 1998-2003, 2009-2010 Liliana Florea
           © 2009-2010 Leming Zhou
           © 2001-2009 Mihaela Pertea
           © 1998-2009 Arthur Delcher
License: GPL-2+

Files: libutil/md5.c
Copyright: 1991-1992 RSA Data Security, Inc.
License: RSA

Files: libutil/qsort_mt.c
Copyright:
         1992-1993 Regents of the University of California
         2006-2007 Diomidis Spinellis
License: BSD-3-Clause

Files: libutil/kazlib/*
Copyright: 1997-1999 Kaz Kylheku <kaz@ashi.footprints.net>
License: Free-Software-License

Files: libutil/mt19937ar/*
Copyright: 1997-2002 Makoto Matsumoto and Takuji Nishimura
License: BSD-3-Clause-Generic

Files: debian/*
Copyright:
         2015-2016 Afif Elghraoui <afif@debian.org>
License: GPL-2+

Files: debian/tests/test-data/test_data.tar.gz
Copyright: 1996-2018 NCBI
License: unrestricted
 Databases of molecular data on the NCBI Web site include such examples as
 nucleotide sequences (GenBank), protein sequences, macromolecular
 structures, molecular variation, gene expression, and mapping data. They
 are designed to provide and encourage access within the scientific
 community to sources of current and comprehensive information. Therefore,
 NCBI itself places no restrictions on the use or distribution of the data
 contained therein. Nor do we accept data when the submitter has requested
 restrictions on reuse or redistribution.
Comment:
 The test data files contained in the archive were downloaded from NCBI RefSeq
 and EST databases using wget and idfetch (from ncbi-tools-bin package):
    wget ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/Mycobacterium_tuberculosis/latest_assembly_versions/GCF_000195955.2_ASM19595v2/GCF_000195955.2_ASM19595v2_genomic.fna.gz
    wget ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/Mycobacterium_leprae/latest_assembly_versions/GCF_000195855.1_ASM19585v1/GCF_000195855.1_ASM19585v1_genomic.fna.gz
    idfetch -G EST_GIs.txt -t 5 -o ESTs.fasta

License: GPL-2+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 2 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".

License: BSD-3-Clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
 1. Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
 2. Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions and the following disclaimer in the
    documentation and/or other materials provided with the distribution.
 3. Neither the name of the University nor the names of its contributors
    may be used to endorse or promote products derived from this software
    without specific prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND
 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE
 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
 OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
 OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
 SUCH DAMAGE.

License: BSD-3-Clause-Generic
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
 1. Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
 2. Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions and the following disclaimer in the
    documentation and/or other materials provided with the distribution.
 3. The names of its contributors may not be used to endorse or promote
    products derived from this software without specific prior written
    permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
 A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR
 CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
 EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
 PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
 PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
 LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

License: RSA
 License to copy and use this software is granted provided that it
 is identified as the "RSA Data Security, Inc. MD5 Message-Digest
 Algorithm" in all material mentioning or referencing this software
 or this function.
 .
 License is also granted to make and use derivative works provided
 that such works are identified as "derived from the RSA Data
 Security, Inc. MD5 Message-Digest Algorithm" in all material
 mentioning or referencing the derived work.
 .
 RSA Data Security, Inc. makes no representations concerning either
 the merchantability of this software or the suitability of this
 software for any particular purpose. It is provided "as is"
 without express or implied warranty of any kind.
 .
 These notices must be retained in any copies of any part of this
 documentation and/or software.

License: Free-Software-License
 All rights are reserved by the author, with the following exceptions:
 Permission is granted to freely reproduce and distribute this software,
 possibly in exchange for a fee, provided that this copyright notice appears
 intact. Permission is also granted to adapt this software to produce
 derivative works, as long as the modified versions carry this copyright
 notice and additional notices stating that the work has been modified.
 This source code may be translated into executable form and incorporated
 into proprietary software; there is no requirement for such software to
 contain a copyright notice related to this source.
