OpenMS
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TargetedFileConverter

Converts different spectral libraries / transition files for targeted proteomics and metabolomics analysis.

Can convert multiple formats to and from TraML (standardized transition format). The following formats are supported:

  • TraML
  • OpenSWATH TSV transition lists
  • OpenSWATH PQP SQLite files
  • SpectraST MRM transition lists
  • Skyline transition lists
  • Spectronaut transition lists

The command line parameters of this tool are:

INI file documentation of this tool: