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OpenMS
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The DatabaseFilter tool filters a protein database in fasta format according to one or multiple filtering criteria.
The resulting database is written as output. Depending on the reporting method (method="whitelist" or "blacklist") only entries are retained that passed all filters ("whitelist) or failed at least one filter ("blacklist").
Implemented filter criteria:
accession: Filter database according to the set of protein accessions contained in an identification file (idXML, mzIdentML)
The command line parameters of this tool are:
INI file documentation of this tool: