OpenMS
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FeatureLinkerUnlabeledQT

Groups corresponding features from multiple maps using a QT clustering approach.

potential predecessor tools → FeatureLinkerUnlabeledQT → potential successor tools
FeatureFinderCentroided
(or another feature detection algorithm)
ProteinQuantifier
MapAlignerPoseClustering
(or another map alignment algorithm)
TextExporter
SeedListGenerator

Reference:
Weisser et al.: An automated pipeline for high-throughput label-free quantitative proteomics (J. Proteome Res., 2013, PMID: 23391308).

This tool provides an algorithm for grouping corresponding features in multiple runs of label-free experiments. For more details and algorithm-specific parameters (set in the ini file) see "Detailed Description" in the algorithm documentation".

FeatureLinkerUnlabeledQT takes several feature maps (featureXML files) and stores the corresponding features in a consensus map (consensusXML file). Feature maps can be created from MS experiments (peak data) using one of the FeatureFinder TOPP tools.

See also
FeatureLinkerUnlabeled FeatureLinkerLabeled

The command line parameters of this tool are:

INI file documentation of this tool: