OpenMS
Loading...
Searching...
No Matches
PSMFeatureExtractor

PSMFeatureExtractor computes extra features for each input PSM.

Experimental classes
Parts of this tool are still work in progress and usage and input requirements or output might change. (multiple_search_engine, Mascot support)
pot. predecessor tools → PSMFeatureExtractor → pot. successor tools
PeptideIndexer PercolatorAdapter

PSMFeatureExtractor is search engine sensitive, i.e. it's extra features vary, depending on the search engine. Thus, please make sure the input is compliant with TOPP SearchengineAdapter output. Also, PeptideIndexer compliant target/decoy annotation is mandatory. Currently supported search engines are Comet, X!Tandem, MSGF+. Mascot support is available but in beta development.

Note
if you have extra features you want to pass to percolator, use the extra flag and list the MetaData entries containing the extra features.

The command line parameters of this tool are:

INI file documentation of this tool: