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OpenMS
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Calculates false discovery rate estimates on crosslink identifications.
This tool calculates and FDR estimate for crosslink identifications, which are produced by OpenPepXL. The method employed currently is identical to the target-decoy approach used by xProphet (Walzthoeni et al., 2012). Consequently, this tool can also consume xquest.xml files (produced either by OpenPepXL or xQuest). The tool supports output in the idXML and mzIdentML formats.
pot. predecessor tools | → XFDR → | pot. successor tools |
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OpenPepXL | OpenPepXLLF | - |
The command line parameters of this tool are:
INI file documentation of this tool: