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OpenMS
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Picks peaks in SRM/MRM chromatograms that belong to the same precursors.
potential predecessor tools | → MRMTransitionGroupPicker → | potential successor tools |
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OpenSwathChromatogramExtractor | OpenSwathFeatureXMLToTSV | |
MRMMapper |
This tools accepts a set of chromatograms and picks peaks in them, correctly grouping related transitions from the same precursor together. It will perform the following steps:
Step 1 is performed by smoothing the individual chromatogram and applying the PeakPickerHiRes.
Step 2 is performed by finding the largest peak overall and use this to create a feature, propagating this through all chromatograms.
This tool will not compute any scores for the peaks, in order to do peak picking please use TOPP_OpenSwathAnalyzer
The command line parameters of this tool are:
INI file documentation of this tool: