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OpenMS
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Executes workflows created by TOPPAS.
This tool is the non-GUI, i.e. command line version for non-interactive execution of TOPPAS pipelines. In order to really use this tool in batch-mode, you can provide a TOPPAS resource file (.trf) which specifies the input files for the input nodes in your pipeline.
*.trf files
A TOPPAS resource file (*.trf
) specifies the locations of input files for a pipeline. It is an XML file following the normal TOPP INI file schema, i.e. it can be edited using the INIFileEditor or filled using a script (we do NOT provide one - sorry). It can be exported from TOPPAS (File -> Save TOPPAS resource file
). For two input nodes 1 and 2 with files (dataA.mzML
, dataB.mzML
) and (dataC.mzML
) respectively it has the following format.
The command line parameters of this tool are:
INI file documentation of this tool: